
In the main window click File and go to New Molecule. Let's quickly load a molecule so we can see what the different windows do. The graphical user interface and the text console interface forĭisplaying and grapically manipulating molecules, and describes how toĬustomize the appearance and behavior of VMD for each user. The view window is where your molecules will appear, and the main window is where most of the controls for VMD are found.
Open TkConsole and execute the following commands: pbc join res -ref '' -molid